[Freesurfer] Compiling Freesurfer 6 on Centos7 Install not working due to annex files missing

2020-04-08 Thread Jorge Naranjo
External Email - Use Caution Hi all I’m building Freesurfer version 6 (stable6 branch) in a fresh centos7 OS git clone https://github.com/freesurfer/freesurfer.git cd freesurfer git checkout stable6 git remote add datasrc https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/re

[Freesurfer] problems compiling Freesurfer

2019-05-26 Thread Jorge Naranjo
External Email - Use Caution Hi All, IM compiling freesurfer, after many bumps reached a point i havent figured out how to proceed. My setup: Centos7 GCC 4.8.5 Freesurfer 6.0.0 Dependencies as in /usr/pubsw/packages/ - KWWWidgets : CVS-vtk560 - petsc : 2.3.3-p13 - mni 1.5 - t