to compare the performed work on each execution? I'm thinking on
the number of GPU kernels executed, the number of the iterations of the
methods...
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edifici D
E-08193 Bellaterra, Barcelona
http:
ork realized in each execution? I'm thinking on
the number of GPU kernels executed, the number of the iterations of the
methods...
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
http://www.pic.es
Avis - Aviso - Legal Notice: http
ork realized in each execution? I'm thinking on
the number of GPU kernels executed, the number of the iterations of the
methods...
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
http://www.pic.es
Avis - Aviso - Legal Notice: http
t; HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
--
Jordi Delgado Mengual
PIC (Port d'Informació Cient
er's Guide wiki on the
> Freesurfer site?
>
> - Bryan
>
> --
> *From:* Jordi Delgado [jordi...@pic.es]
> *Sent:* Thursday, July 03, 2014 12:36 AM
> *To:* Chiu, Bryan (PHTH)
> *Cc:* freesurfer@nmr.mgh.harvard.edu
>
> *Subject:* Re: [Fre
t;
> - Bryan
>
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> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
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> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e
Dear Elijah,
If I'm right, there are two options to accelerate FS execution:
1) The first option is using the FS openmp implementation
http://surfer.nmr.mgh.harvard.edu/fswiki/OpenMP. I haven't tested this way
but openmp allows to open multiple processing threads, and it is supported
for the most
Dear freesurfers,
I'm trying to exploit CUDA capabilities by using recon-all with -use-gpu.
On the freesurfer wiki I found an approximate speedups for the main CUDA
implementations in Freesurfer (
http://ftp.nmr.mgh.harvard.edu/fswiki/CUDADevelopersGuide).
But I can't found mri_watershed_cuda and
will correct for intensity bias. You can have
> it generate two series - one with and one withour the correction. What
> other artifacts do you mean? There are lots of possibilities
>
> cheers
> Bruce
>
>
>
>
> On Mon, 13 May 2013, Jordi Delgado wrote:
>
> D
ram?
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edifici D
E-08193 Bellaterra, Barcelona
Tel: +34 93 586 82 32 Fax: +34 93 581 41 10
http://www.pic.es
Avis - Aviso - Legal Notice: http://ww
Dear Freesurfers,
After running the first tests of freesurfer 5.2, I found a file named
$hemi.w-g.pct.stats on the stats folder. The last column of the file is a
SNR calculation, i found on the help manual, that is required to add --snr
to perform this calculation.
I'm interested to know how this
w how this SNR is calculated. Is there any method or
paper related?
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edifici D
E-08193 Bellaterra, Barcelona
Tel: +34 93 586 82 32 Fax: +34 93 581 41 10
http://www.pic.es
Avis - Aviso - Legal No
rresponding labels, as
> found in FreeSurferColorLUT.txt
>
> Cheers,
> Gabriel.
>
>
> El 22/03/13, *Jordi Delgado * escribió:
>
> Dear FS experts,
>
> I have a double question about the gray matter calculations in FS:
>
> - Revising the aseg.stats, I noticed that th
Dear FS experts,
I have a double question about the gray matter calculations in FS:
- Revising the aseg.stats, I noticed that there is a Total Gray Volume
calculation. Is there a mgz volume with the gray matter? I cannot find it
on the output mri folder...
- How this total Gray Volume is calcula
rfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.pa
`/home/neuro/dev'
make: *** [all] Error 2
I don't know what is going wrong... Any idea?
Thank you in advance!
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edifici D
E-08193 Bellaterra, Barcelona
Tel: +34 93 586 82 32 Fax: +34 93 581 41 10
http://www.pic.es
] Error 1
make[2]: Leaving directory `/tmp/dev/mri_em_register'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/dev'
make: *** [all] Error 2
It seems that there are some files that aren't compatible with 32 bits...
2011/5/25 Yaroslav Halchenko
> lacking -lXmu
Hi Freesurfers,
I've downloaded FS from CVS, and I have Cent OS 5.5 (32 bits)
I've done:
./configure --prefix="/tmp/freesurfer"
--with-mni-dir="/tmp/packages/mni/current"
--with-tcl-dir="/tmp/packages/tcltktixblt/current"
--with-vtk-dir="/tmp/packages/vtk/current"
--with-vxl-dir="/tmp/packages/v
Hi Freesurfers,
I'm trying to download the FreeSurfer's source code from de repository
using:
cvs -d :pserver:anonym...@fsvm.nmr.mgh.harvard.edu:/usr/fscvsroot
checkout -P dev
and I obtain this message:
cvs checkout: authorization failed: server
fsvm.nmr.mgh.harvard.edu rejected access
o whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but doe
eesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.par
0 0
[stack]
ff60-ffe0 ---p 00:00 0
[vdso]
I attached the output log of the execution.
Any idea will be apreciated!
Thank you in advance!!
--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edifici D
E-08193 Bellaterra, Barcelona
Tel: +34 9
Dear FS experts,
We are using the 4.3.1 version of FreeSurfer, and we have noticed that in
the lh.aparc.stats/rh.aparc.stats file there are 35 structures calculated
and not 36 structures, only corpuscallosum is missing.
We have also compared it with an old subject processing (using 4.0.2 version
Dear FS experts,
We are using the 4.3.1 version of FreeSurfer, and we have noticed that in
the lh.aparc.stats/rh.aparc.stats file there are 35 structures calculated
and not 36 structures, only corpuscallosum is missing.
We have also compared it with an old subject processing (using 4.0.2 version
Error in Analyze: command failed: mri_glmfit --y
../path/qdec/qdecUntitled/y.mgh --fsgd ../path/qdec/Untitled/qdec.fsgd dods
--glmdir ../path/qdec/Untitled --surf fsaverage lh --label
../path/fsaverage/label/lh.cortex.label
Any idea?
Thank you in advance,
--
Jordi Delgado Mengual
PIC (Port d&
-- Forwarded message --
From: Jordi Delgado
Date: 2009/10/30
Subject: FreeSurfer Error: bits = 0 not supported.
To: freesurfer@nmr.mgh.harvard.edu
Hello*,
*
My name is Jordi Delgado, I work with FreeSurfer on a cluster of machines.
Yesterday I sent some subjects to process and
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