[Freesurfer] ?h.aparc.annot data for N27 brain?

rposes). I am following up with AFNI as well but haven't heard back yet. Thanks very much, John Sheppard -- John P. Sheppard Undergraduate Student Departments of Biomedical Engineering & Statistics Research Assistant Department of Communication Sciences & Disorders Northwestern U

Re: [Freesurfer] installation help

atsu, BA > MA Candidate > Department of Psychology > University of British Columbia > 2136 West Mall > Vancouver, B.C. > Canada, V6T 1Z4 > Tel: (604) 822-3120 > Fax: (604) 822-6923 > > ___ > Freesurfer mailing list >

[Freesurfer] Minor issues with Freesurfer v4.0.4/rerunning on 4.2.0

rching the mailing list archives. Thanks! John -- John Sheppard Undergraduate Student Department of Biomedical Engineering Northwestern University Phone: (630) 957-8321 E-mail: john-shepp...@northwestern.edu Address: 1927 Orrington Ave. Rm 8203 Evanston

Re: [Freesurfer] 4.1.0 on Ubuntu 8.04

IT/HMS Athinoula A. Martinos Center for Biomedical Imaging > 149 (2301) 13th Street, Charlestown, MA 02129 USA > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer &g

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

Also, in case anyone is interested -- if you have a brik volume in the subject folder, specifying mri/orig/001.mgz gives the same error as specifying orig/001.mgz, at least for me. So that wasn't the cause of the problem. John On Thu, Oct 23, 2008 at 7:44 AM, John Sheppard < [EMAIL P

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

k Volume_ns+orig.BRIK 001.mgz > mv 001.mgz orig/ > > Thanks > Krish > > > > On Oct 22, 2008, at 10:01 PM, John Sheppard wrote: > > Hey everyone, >> >> I'm having some issues trying to run the volume pipeline using .BRIK input >> from afni

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

to start with.) Cheers, John On Wed, Oct 22, 2008 at 9:41 PM, Bruce Fischl <[EMAIL PROTECTED]>wrote: > Hi John, > > can you send us the command line you are running? > > cheers, > Bruce > > On Wed, 22 Oct 2008, John Sheppard wrote: > > Hey everyone, &g

[Freesurfer] Error with mri_convert failing to write orig/001.mgz

Didn't find this issue in prior mailing list emails, so I hope this isn't a repeat question. Thanks! John Sheppard Recon output below: mri_convert --in_type brik Volume_ns+orig.BRIK orig/001.mgz $Id: mri_convert.c,v 1.146.2.3 2008/08/11 22:18:58 nicks Exp $ reading f

[Freesurfer] Question about mri_ca_normalize

urface size through these normalization commands. I'm also looking at the mri_nu_correct.mni command which was taken from MNI - haven't had much luck there but I've been messing with the iteration number (and trying removing it completely). Thanks in advance! -- John Shepp

[Freesurfer] Question regarding pial surface correction

make its own judgments on where the pial surface should be, combinining user input with intensity/morphometry considerations? Kind of like the way WM control points work (in a sense). Thanks! -- John Sheppard Undergraduate Student (Class of 2010) Department of Biomedical Engineering Northwe

Fwd: [Freesurfer] Fixing WM intensity normalization via control points

t: Re: [Freesurfer] Fixing WM intensity normalization via control points To: John Sheppard <[EMAIL PROTECTED]> Did anyone answer these questions for you? On Wed, 24 Sep 2008, John Sheppard wrote: Hello, > > I have some basic questions with regards to adding control points to fix >

[Freesurfer] Fixing WM intensity normalization via control points

processing pipeline. Much thanks, John Sheppard ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer