[Freesurfer] FreeSurfer Import File

2019-08-05 Thread Jiajun Luo
External Email - Use Caution Hi, I am beginner for FreeSurfer... I want to run recon-all on my MRI T1 data. I have a series of dcm files for an individual and these dcm files are archived in a tgz file. What should I import to FreeSurfer for recon-all? A single dcm file, or some s

[Freesurfer] Help for Hippocampal Calculation

2019-07-30 Thread Jiajun Luo
External Email - Use Caution Hi, Now I have T1 and T2 images (dcm files) and want to calculate the hippocampal volume. I find it takes ~20h to run recon-all -all and then ~40min to run -hippocampal-subfields-T1. However, I need to calculate the hippocampal volume for more than 1,0