[Freesurfer] new version of qdec

2011-06-20 Thread Jeanette Berberich
Hey All, Is there anywhere I can download just the newest version of the qdec files ($FREESURFER_HOME/bin/: qdec, qdec_glmfit and qdec.bin)? I want the abilities of the newer qdec but want to keep the version of freesurfer I have to keep my current data consistent. Thank you, Jeanette ___

[Freesurfer] Adding a new measure to the design tab

2011-06-13 Thread Jeanette Berberich
Hi, So I'm trying to add new measures, after having run recon-all -qcache, to my design tab drop-down menu and it doesn't seem to be working. I was a little confused about the .Qdecrc file. I put a file named qdec.Qdecrc file inside my $SUBJECTS_DIR/qdec/ and i also have a qdec.fsgd file in the

[Freesurfer] Unable to run mris_preproc and load data in qdec

2011-06-02 Thread Jeanette Berberich
Hello! So, my first problem was that I wasn't able to load my new mgh files into qdec. I tried to follow this procedure: 1. Convert a curv file from you subject into mgh: mri_convert lh.curv lh.curv.mgh 2. Load in the mgh file to matlab lhcurv = MRIread('lh.curv.mgh'); 3. Replace the pix