Hi FreeSurfers,
I have a group of subjects with manual edits to the aparc+aseg volume.
These edits were made to re-label unknown regions of cortex. I am wondering
what recon-all flags I could use to implement the changes and re-generate
cortical stats based on these edits. Thanks in advance.
Best
We are using Freesurfer v6.0
Biomedical Engineer, Brain Rehabilitation Research Center
Malcolm Randall VA Medical Center, 1601 SW Archer Road, Gainesville, FL
32608
Phone: 1-352-376-1611 ext. 5249, E-mail: jakeri...@gmail.com
On Thu, Sep 7, 2017 at 6:17 PM, Douglas N Greve
wrote:
> what version
./surf/lh.defect_labels:
>> overlay_threshold=1,
>> 255:edgecolor=overlay \
>> -slice 172 123 134
>>
>>
>> if you page through a few axial slices you will see that the
>> wm.mgz is connected to the body of the wm in slice
34
>
>
> if you page through a few axial slices you will see that the wm.mgz is
> connected to the body of the wm in slice 109, disconnecs in 110, then
> reconnects to a different part in 115, which should never happen
>
> cheers
> Bruce
> On Thu, 27 Jul 2017, Jake Rieke wr
:16 PM, Bruce Fischl
wrote:
> Hi Jake
>
> usually that means that there is a topology defect that is being
> incorrectly fixed. If you upload the subject and point us at the voxel
> coords we will take a look
>
> cheers
> Bruce
>
> On Wed, 26 Jul 2017, Jake Ri
