[Freesurfer] Flipping an overlay

2012-12-11 Thread Inge Kasbohm Amlien
Hi list, I have a rh overlay (from caret) registered to fsaverage rh. I need it on fsaverage left hemi. Is there an easy way to flip an overlay? Cheers Inge ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.ed

[Freesurfer] Freeview scripting reference

2012-06-29 Thread Inge Kasbohm Amlien
! ___ Inge Kasbohm Amlien E-mail: inge.aml...@psykologi.uio.no Phone: +47 97106525 Psychologist // Ph.D candidate Centre for the Study of Human Cognition Department of Psychology, University of Oslo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Gradient unwarp problem

2008-06-05 Thread Inge Kasbohm Amlien
Hello list, we are looking into the possibility of adding the gradient unwarp tool (http://www.nbirn.net/tools/gradient_non_linearity/index.shtm) to our Freesurfer processing stream, but we are experiencing some problems with the output. Our physicist sent me what he believed was the sympatheti

RE: [Freesurfer] Tutorial data

2006-05-22 Thread Inge Kasbohm Amlien
That's great Nick, thanks. /Inge -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: 23. mai 2006 00:44 To: Inge Kasbohm Amlien Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] Tutorial data Inge, Funny you should ask. We are busily updating this data

[Freesurfer] Tutorial data

2006-05-22 Thread Inge Kasbohm Amlien
I read a while back the tutorial data had been reprocessed with version 3.0, but not uploaded yet. Is the new data uploaded now? If so, is this the correct dataset for the morphometry and reconstruction tutorial? ftp://surfer.nmr.mgh.harvard.edu/pub/dist/buckner_data-tutorial_subjs.tar.gz (The dat