t;
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Iglesias Gonzalez, Juan E.,PHD
mailto:jiglesiasgonza...@mgh.harvard.edu>>
Sent: Saturday, September 24, 2022 8:09 PM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Thalamic n
Dear AJ,
Thanks for the interest in our tool.
Answers inline
Can SynthSR be used on MRI scans of subjects with T2 lesions, such as MS?
Yes!
If yes, is their a way to save the masks of lesions that were Inpainted or
their volume?
Nope, sorry.
For the output files, what are their image parameters
Dear Angelique
I’m not a 3DSlicer expert but you can extract the regions with
mri_extract_region, turn them into stl meshes with mri_mc, and possibly smooth
them a bit with mris_smooth
Cheers,
/E
Juan Eugenio Iglesias
http://www.jeiglesias.com
On Sep 24, 2022, at 16:15, Paulk, Angelique C.,PHD
Dear Kimi,
When you process the scans longitudinally with FreeSurfer, the file base-tps
should be created in the subject directory of the template. Isn’t this the case?
Cheers,
/Eugenio
Juan Eugenio Iglesias
http://www.jeiglesias.com
On 19 Sep 2022, at 01:02, Raikkonen Kimi
mailto:akdaus
