[Freesurfer] Version 6.1 and aseg histograms

2019-01-22 Thread Hatton, Sean
External Email - Use Caution Hi all, Two quick questions: 1. Is there an expected timeframe for when FreeSurfer 6.1 (or next version) is published? 2. In aseg, is there a way to manually select the histograms or mean/SD of the ROIs? Regards, Sean Hatton, PhD Assistant Proj

Re: [Freesurfer] Updating FreeSurfer v5.1 statistics to FreeSurfer v5.3

2017-08-07 Thread Hatton, Sean
Thank you for your reply, that is all I am seeing :D Have a great week! Sean Hatton, PhD Postdoctoral Scholar, Department of Psychiatry UCSD ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

[Freesurfer] Updating FreeSurfer v5.1 statistics to FreeSurfer v5.3

2017-08-07 Thread Hatton, Sean
Hello FreeSurfer experts, I have many FS5.1 edited-subjects that I want to use in an application that only takes FS5.3 formatted statistics. I ran 20 subjects in FS51 and FS53. I took the FS51 subjects and reran recon-all -segstats (in FS53) and it updated aseg.stats closer to the values for FS

[Freesurfer] Surfaces without segmentation

2016-12-02 Thread Hatton, Sean
Hello, We are just interested in generating the white and pial surfaces without segmentation. 1. Are there additional switches for running mris_make_surfaces without aseg (for -white section) or apar.annot (for -pial section)? 2. We would like to control intensity values - can we specify tissu