[Freesurfer] mri_binarize --gm option unknown

2016-11-02 Thread HOSSU Gabriela
Hello everyone, I am trying to run a mri_binarize command on FS v 5.2, Linux 64bit, but when I use the option -gm (also for -subcort-gm). I am getting an error that says the -gm option is not recognized. Here is the command line and the following error (from the mri folder of a subject): mri_bi

[Freesurfer] mpr2mni305 failed

2015-07-09 Thread HOSSU Gabriela
Hi everyone, I try the recon all procedure on an average subject from SPM canonical database. I have the following error : ERROR: mpr2mni305 failed. How could I solve it? Thanks for help, Gabriela Hossu ___ Freesurfer mailing list Freesurfer@nmr.mgh

[Freesurfer] ICV estimation

2012-03-30 Thread HOSSU Gabriela
Dear all, I am working with FreeSurfer version 5.10 from 2 months. I am interested in hippocampus volume measurements and I want to normalize them with the intracranial volume. We have scanned about 4 times the same 2 healthy subjects (3T GE HDxt, 8 channel coil). 3D acquisitions were made