[Freesurfer] stable6

2016-02-18 Thread Grafe,Brendan P. (BIDMC - Neurology)
Hello all, I have been slowly processing a longitudinal dataset off and on again since last August, sourcing /usr/local/freesurfer/nmr-stable6-env. Does this represent v.6.0-beta or v.6.0 in development? We were initially interested in applying the hippocampal subfield segmentation functionalit

[Freesurfer] R: Re: v.6.0 Permissions Error

2016-02-17 Thread Grafe,Brendan P. (BIDMC - Neurology)
:43 -0500 From: Douglas N Greve Subject: Re: [Freesurfer] v.6.0 Permissions Error To: freesurfer@nmr.mgh.harvard.edu Message-ID: <56c3975b.60...@nmr.mgh.harvard.edu> Content-Type: text/plain; charset=windows-1252; format=flowed ok, try now On 02/16/2016 04:38 PM, Grafe,Brendan P. (BIDMC - Neu

[Freesurfer] v.6.0 Permissions Error

2016-02-16 Thread Grafe,Brendan P. (BIDMC - Neurology)
Hello all, I am in the middle of a FreeSurfer v.6.0 longitudinal analysis, running on the Martinos cluster, and I received an error today during the (-base) template creation step regarding a file that the pipeline calls upon: GCAread(/usr/local/freesurfer/stable6/average/RB_all_