Re: [Freesurfer] Fwd: probabilistic segmentation of gray matter

2009-10-14 Thread Giacomo Mandruzzato
ischl > Hi Giacomo, > > we don't write out the probabilities by default. To get them you would need > to add -write_probs to the mri_ca_label command line (you > can find it in recon-all.log for each subject). > > cheers > Bruce > > On Wed

[Freesurfer] Fwd: probabilistic segmentation of gray matter

2009-10-14 Thread Giacomo Mandruzzato
-- Forwarded message -- From: Giacomo Mandruzzato Date: 2009/10/14 Subject: probabilistic segmentation of gray matter To: freesurfer@nmr.mgh.harvard.edu Hi, I have a question about a probabilistic segmentation of gray matter with freesurfer. How can I do it? if I binarize like

[Freesurfer] problem display tksurfer in vmware

2009-09-26 Thread Giacomo Mandruzzato
Hi, I'm Giacomo Mandruzzato, a student of Bioengineering at Padova (DIE) and I'm working on my Thesis with Freesurfer (last version). I am using a virtual machine Vmware 2.5.3 with Cent0S 5.1 running FSL virtual disk in Windows Vista Home premium, I installed freesurfer and tkmedit