Hi everyone,
In using Van Leemput's -hippo-subfields flag as part of the recon-all script to
obtain hippocampal subfield volumes, my lab has determined that larger
subfields are more relevant for our purposes clinically/surgically. Is there a
way to group the fimbria/CA1/2,3/4,DG/presubiculum/s
Hi all,
A couple questions regarding post-surgery scans.
1. Is there a way to run scans of post-surgical brains that takes resections
into account and gives more accurate results than "recon-all -all"?
2. Is it possible to obtain resection volumes with FreeSurfer? I tried to do
this indirectly
Hi everyone,
After running -hippo-subfields, I converted the voxel output of
-hippo-subfields to mm^3 based on the instructions given here:
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-June/031188.html.
Then I summed the volumes for all of the subfields (assuming that this would
Hi all,
A few questions.
1. Is there a way to run scans of post-surgical brains that takes resections
into account and gives more accurate results than "recon-all -all"?
2. Is it possible to obtain resection volumes with FreeSurfer? I tried to do
this indirectly by finding the difference betwee
