Re: [Freesurfer] ERROR- input(s) cannot have multiple frames on Recon-all

ind of MRI acquisition are you trying to use as input? Most standard T1-weighted series only have a single frame Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Frank Chau Sent: Monday, August 2, 2021 3:49 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Jacky Lee ; Jacky LEE Subject: [

[Freesurfer] ERROR- input(s) cannot have multiple frames on Recon-all

External Email - Use Caution Dear Freesurfer experts, I tried to run Recon-all on a T1 series .nii file. A error occurred: "ERROR: input(s) cannot have multiple frames!". I tried to google the method of converting multi frame dicom to single frame dicom. I found software of

[Freesurfer] Recon-all error output

External Email - Use Caution Dear Freesurfer experts, I ran Recon-all on a batch of subject. Only one Recon-all error results were generated which the process just last for few minutes. There just 2 mgz file in mri folder of the subject output directory were generated. I re-run

Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"

nd us the recon-all.log file? Or tar and gzip the entire subject dir and upload it to our ftp site? Apologies if any of this has been done. cheers Bruce On Thu, 12 Mar 2020, Frank Chau wrote: >External Email - Use Caution > > Dear Douglas , > > How could I find out the root c

Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"

the image) > anyways. > > The error you get, if I understand correctly from the logs, is that *after* > the resampling, the FOV *still* is not 256. > > Best, > > Tim > >> On March 9, 2020 at 7:34 PM Frank Chau wrote: >> >> >> External

Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"

...@nmr.mgh.harvard.edu on behalf of Frank Chau Sent: 06 March 2020 22:17 To: Freesurfer support list Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS" External Email - Use Caution Dear Tim, The FOV of my T1 series is 256 x 240. Is it the FOV of the T1 series will

Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"

that when running `mri_info` on the file you provided, it shows a FOV of 256 (not 284!) for me, so I have no idea why this error is triggered in recon-all. Maybe somebody else has an idea... Tim > On March 4, 2020 at 4:47 PM Frank Chau wrote: > > > External Email - Use Cauti

Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"

e file you provided, it shows a FOV of 256 (not 284!) for me, so I have no idea why this error is triggered in recon-all. Maybe somebody else has an idea... Tim > On March 4, 2020 at 4:47 PM Frank Chau wrote: > > > External Email - Use Caution > > Dear Tim, > > I

[Freesurfer] freesurfer- recon-all "exited with ERRORS"

External Email - Use Caution Hello FreeSurfer Developers, I ran a recon-all on a recent batch of T1 Nifti files and all ended with "exited with ERRORS". For example: "recon-all -s Chan_Pui_Kim_42M_T1 exited with ERRORS at Sat Jan 11 01:32:55 HKT 2020". I've searched the email a

Re: [Freesurfer] Run Recon-all Parallel on Linux

apy > University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany > >> On January 4, 2020 at 7:08 AM Frank Chau wrote: >> >> >>External Email - Use Caution >> >> Dear Bruce, >> >> No, I want to run recon-all

Re: [Freesurfer] Run Recon-all Parallel on Linux

. Alternatively if you have enough RAM you can just run multiple recon-alls at the same time (which will give you a bigger effective speed increase) cheers Bruce On Fri, 3 Jan 2020, Frank Chau wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > > >

[Freesurfer] Run Recon-all Parallel on Linux

External Email - Use Caution Dear Freesurfer experts, May I know how to run Recon-all in parallel on Linux? I have read some source said that can use "gnu parallel" to complete it. But they do not describe it in detail how to perform it. Regards Frank -