Re: [Freesurfer] X11 / mesa update broke tkmedit snapshots

2016-06-22 Thread Flavin, John
I should add that we're running tkmedit using xvfb since the process is automated and runs without a physical screen. Flavin > On Jun 22, 2016, at 4:15 PM, Flavin, John wrote: > > Hi all, > > I run the pipelines for the CNDA and various other XNAT installations. We > r

[Freesurfer] X11 / mesa update broke tkmedit snapshots

2016-06-22 Thread Flavin, John
Hi all, I run the pipelines for the CNDA and various other XNAT installations. We recently updated some of our packages, and our Freesurfer snapshots (generated with tkmedit using a tcl script) have broken. We're on Centos 6.8. The package that seems to cause the breakage is one of the mesa pa

Re: [Freesurfer] using mri_convert with multiframe dicom

2014-10-23 Thread Flavin, John
multi-frame dicom myself. Can you upload one to me? It should be of a phantom, not a human, so we can avoid privacy issues. doug On 10/23/2014 01:07 PM, Flavin, John wrote: Hi Timothy you should be able to. You can use the -nth switch to convert each frame individually cheers Bruce On Mon,

Re: [Freesurfer] using mri_convert with multiframe dicom

2014-10-23 Thread Flavin, John
Hi Timothy you should be able to. You can use the -nth switch to convert each frame individually cheers Bruce On Mon, 11 Jul 2011, Timothy Brown wrote: > Hi All, > > Can mri_convert be used with multiframe dicom? Is this advice still valid? I tried converting a multi frame DICOM (176 fra