Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-19 Thread Flavia Niccolini new
1000 --distance 50 --no-rescale > --i orig.mgz --o orig_nu.mgz > > > > On 03/14/2016 05:43 AM, Flavia Niccolini new wrote: >> Hi Douglas, >> >> I have done this and I got the following message: >> >> “cd /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjec

Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-14 Thread Flavia Niccolini new
-no-rescale > --i orig.mgz --o orig_nu.mgz > > > > On 03/07/2016 04:09 PM, Flavia Niccolini new wrote: >> Hello, >> >> I was wondering whether you could help with this error: >> >> # >> #@# MotionCor

[Freesurfer] error - mri_nu_correct.mni

2016-03-07 Thread Flavia Niccolini new
Hello, I was wondering whether you could help with this error: # #@# MotionCor Thu Mar 3 11:35:51 GMT 2016 Found 1 runs /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjects/PD1/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one

[Freesurfer] mri_label_volume

2014-09-11 Thread Flavia Niccolini
Dear Freesurfer expert, I am trying to normalized for ICV subcortical volume (Buckner et al. 2004) using the following:' mri_label_volume [options]...' where options are either '-atlas_icv ' or '-eTIV '. My version of freesurfer is 5.3.0. But I get this problem: $ mri_label_volume -atla

[Freesurfer] Freesurfer MAC installation

2013-05-17 Thread Flavia Niccolini
Hi I am having trouble with the license file. I created in Freesurfer a file named ".license" but I cannot open this and copy the license. where and how should I put the 3 lines license? I tried to test my freesurfer installation with Bert but I got as answer "command non found". Please help BW