Re: [Freesurfer] InfantFS - resampling asset to native space

2021-12-08 Thread Fateme Haghpanah
be able to replace > rawavg in your command with the original image that you used as an input. > Lilla > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Fateme Haghpanah > > Sent: Wednesday, December 1, 2021 9:

Re: [Freesurfer] InfantFS - resampling asset to native space

2021-12-02 Thread Fateme Haghpanah
External Email - Use Caution > Hi Everyone, I am reposting this from December 1st since it hasn’t been shown up in the archive. > Dear FreeSurfer Developers, > > We are using InfantFS and noticed that after running recon-all > ("infant_recon_all --newborn --s ${SUBJ}”) , th

[Freesurfer] InfantFS - resampling asset to native space

2021-12-01 Thread Fateme Haghpanah
External Email - Use Caution Dear FreeSurfer Developers, We are using InfantFS and noticed that after running recon-all ("infant_recon_all --newborn --s ${SUBJ}”) , the voxel size changes to 1*1*1. I know that using "mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-r