Re: [Freesurfer] Dura classified as GM in brainmask

2017-12-13 Thread FSL Analysis
need to correct voxels that cause the white and/or pial surfaces to be incorrect, as we correct the aseg with them (at least I think we do in v6) cheers Bruce On Wed, Dec 13, 2017 at 12:11 PM, FSL Analysis wrote: > Hi again, > > I realize my last question about the brainmask did not make

Re: [Freesurfer] Dura classified as GM in brainmask

2017-12-13 Thread FSL Analysis
frontal lobes near the eye region outside of the pial surface outline. How do I edit this? I look forward to your response. Thanks On Tue, Dec 12, 2017 at 4:21 PM, FSL Analysis wrote: > Hi all, > > I have processed data using freesurfer and the output for most of my > subjects di

Re: [Freesurfer] Dura classified as GM in brainmask

2017-12-13 Thread FSL Analysis
frontal lobes near the eye region outside of the pial surface outline. How do I edit this? I look forward to your response. Thanks. On Tue, Dec 12, 2017 at 4:21 PM, FSL Analysis wrote: > Hi all, > > I have processed data using freesurfer and the output for most of my > subjects di

[Freesurfer] Dura classified as GM in brainmask

2017-12-12 Thread FSL Analysis
Hi all, I have processed data using freesurfer and the output for most of my subjects did not remove all of the eye and dura around it during skull stripping. When I check the brainmask there is dura (or blood vessel) in the frontal lobe that is classified as GM. I am wondering if I have to manua