Re: [Freesurfer] save custom made path on surface as label

2012-03-09 Thread Erhan Genc
r? cheers, Erhan 2012/3/7 Bruce Fischl > Yes, you probably need to generate a closed path, or a closed cut. I'm not > sure if we support saving paths as label files. Anyone know? > > Bruce > > On Wed, 7 Mar 2012, Erhan Genc wrote: > > Dear freesurfer experts, >&g

[Freesurfer] save custom made path on surface as label

2012-03-07 Thread Erhan Genc
file? cheers, erhan -- Dipl. Psych. Erhan Genc Max Planck Institute for Brain Research Department of Neurophysiology Deutschordenstr. 46 60528 Frankfurt am Main -GERMANY- phone: +49 (69) 96769-471 fax:+49 (69) 96769-327 e-mail: g...@mpih-frankfurt.mpg.de http://www.brain.mpg.de/research

[Freesurfer] save custom made path on surface as label

2012-03-05 Thread Erhan Genc
file? cheers, erhan -- Dipl. Psych. Erhan Genc Max Planck Institute for Brain Research Department of Neurophysiology Deutschordenstr. 46 60528 Frankfurt am Main -GERMANY- phone: +49 (69) 96769-471 fax:+49 (69) 96769-327 e-mail: g...@mpih-frankfurt.mpg.de http://www.brain.mpg.de/research

Re: [Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-30 Thread Erhan Genc
Alright, thanks a lot. cheers, Erhan 2011/11/30 Douglas N Greve : > There is no specification for it. It is just a number. The value can be used > by some label manipulation routines to exclude values below a certain > threshold. Mostly it is just ignored. > > doug >

Re: [Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-30 Thread Erhan Genc
Hi doug, What kind of a statistic is the last one? cheers, Erhan 2011/11/30 Douglas N Greve : > The first column is the index. 2-4 are xyz (ignored for surfaces). The last > is a statistic which can be 0. > > doug > > > Erhan Genc wrote: >> >> Hi Doug,

Re: [Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-22 Thread Erhan Genc
rted back to an annotation with > mris_seg2annot. > > doug > > Erhan Genc wrote: >> >> Hi Doug, >> >> thanks a lot it worked for the eccen maps. I have now my eccen of >> interest... >> Is there a command to make a intersection area between

Re: [Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-09 Thread Erhan Genc
tself. mri_biniarize > allows you to set upper and lower thresholds. You can then run tksurfer on > the result. > doug > > Erhan Genc wrote: >> >> Hi Doug, >> >> I see. My eccen run has 8 cycles of an expanding ring and each cycle >> take about 64 sec.

Re: [Freesurfer] selxavg3 out of memory

2011-11-08 Thread Erhan Genc
gt; Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr

Re: [Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-01 Thread Erhan Genc
all time points, so no color > represents a particular time point. The colors in the color wheel are hard > to interpret, which is why I recommend against using the color wheel. If you > click on  a point, I believe the value (phase) will be displayed in the > control panel. > doug &

[Freesurfer] color scale interpretation retinotopy eccen maps

2011-11-01 Thread Erhan Genc
) of my functional run? Best, Erhan -- Dipl. Psych. Erhan Genc Max Planck Institute for Brain Research Department of Neurophysiology Deutschordenstr. 46 60528 Frankfurt am Main -GERMANY- phone:  +49 (69) 96769-471 fax:    +49 (69) 96769-327 e-mail: g...@mpih-frankfurt.mpg.de http://www.mpih