[Freesurfer] problem with mri_surfcluster

Hi all, We're trying to create labels from a group level sig.mgh file. However, after the labels are created and an annotation file/color table is made, we try to view the sig.mgh file and the annotation file in tksurfer, but they don't extactly overlap, even though they are both configured to the

[Freesurfer] mri_surfcluster threshold

Hi all, We're trying to create labels from a group level sig.mgh file. However, after the labels are created and an annotation file/color table is made, we try to view the sig.mgh file and the annotation file in tksurfer, but they don't extactly overlap, even though they are both configured to the

[Freesurfer] Problem with mri_segstats

Hi, I've been trying to use mri_segstats on a FA map with a white matter parcellation file (wmparc.mgz) but there might be a problem in the program. When I open the fa.stats output file, all the values (std.dev, etc) are 0. for the 2009 table parcellation ids. However, when I use the label id