[Freesurfer] San Diego NIAAA T32 Postdoc Opening

2018-03-05 Thread Eileen Moore
San Diego NIAAA T32 Postdoc Position Opening Announcement A postdoctoral position in alcohol research is available now through an NIAAA T32 institutional training grant between SDSU and UCSD in San Diego, CA. Postdoctoral appointees are supported for twelve-month, full-time appointments with th

Re: [Freesurfer] Tracula: missing or incomplete tracts

2015-02-27 Thread Eileen Moore
sion space, and then dilating it by a couple of voxels. If you upload an example data set for me here, I can take a look: https://gate.nmr.mgh.harvard.edu/filedrop2/ Please include all tracula-related directories of the subject (dmri, dlabel, etc). Thanks! a.y On Thu, 18 Dec 2014, Eileen M

[Freesurfer] Tracula: missing or incomplete tracts

2014-12-18 Thread Eileen Moore
Hi - I'm having difficulty with missing or incomplete tracts most of my subjects. I'm hoping for suggestions on where I can look for data problems. The majority of my subjects have at least one missing/incomplete tract, but the specific problematic tract varies across subjects (e.g., one subject h

Re: [Freesurfer] trac-all -prep error field map error

2014-09-05 Thread Eileen Moore
27 Aug 2014 13:51:06 -0700 > From: Eileen Moore > Subject: Re: [Freesurfer] trac-all -prep error field map error > To: "freesurfer@nmr.mgh.harvard.edu" > Message-ID: > lvufckbs+_061v7dctfc5t11pn0k4g9d-c...@mail.gmail.com> > Content-Type: text/plain; charset

Re: [Freesurfer] trac-all -prep error field map error

2014-08-27 Thread Eileen Moore
he > phase difference maps you have and let's see what happens. > > Best, > a.y > > On Wed, 16 Jul 2014, Eileen Moore wrote: > > > Hi Anastasia, > > > > OK - our imaging physicists had developed a wrapper script around > epidewarp > > which takes our d

Re: [Freesurfer] trac-all -prep error field map error

2014-07-16 Thread Eileen Moore
er 2 frames (2 separate phase maps) or 1 > frame (the difference phase map). This error from trac-all means that it > found that your input phase map has something other than 1 or 2 frames, so > it doesn't know how to handle it. > > Hope this helps, > a.y > > On Sat, 12

[Freesurfer] Generating individual statistics on a manually traced segmentation/label

2014-03-23 Thread Eileen Moore
Hello FreeSurfer experts, I am using freesurfer v5.3 on a linux os. I have a few questions regarding individual aseg statistics (volume, intensity) for a subcortical region that is not automatically segmented by freesurfer. Using tkmedit I have manually traced my subcortical ROI and saved it as