[Freesurfer] Question: Recon-all Using T1/T2 Mutual Information

External Email - Use Caution Hello Freesurfer team! We are editing brain scans using T1/T2 mutual information to improve the original image. Are the recon-all flags the same with as they would be when editing using only the T1 images (i.e., recon-all -cp, -pial, -wm), or are the

[Freesurfer] Freesurfer/Freeview Version Compatibility

External Email - Use Caution Hi, I'm following up on my quick question from this time last week. I have several brains that I sent through recon-all using Freesurfer 7. If I wanted to use Freeview on Freesurfer version 5 to do pial/wm/and control point edits, would I be able to

[Freesurfer] Freesurfer/Freeview Version Compatibility

External Email - Use Caution Hello, I have several brains that I sent through recon-all using Freesurfer 7. If I wanted to use Freeview on Freesurfer version 5 to do pial/wm/and control point edits, would I be able to do recon-all through Freesurfer 7? I assumed that since Free

[Freesurfer] Errors Running tkmedit

External Email - Use Caution Hello, Our lab has been using Freesurfer 5.3 for it's ongoing longitudinal study. I attempted to quality check one of our brains using tkmedit - I usually don't have any issues following our pipeline or running the tool. This time I received this me

[Freesurfer] Unsure About Longitudinal & GLM Tutorials

External Email - Use Caution Good morning Freesurfer Team! I would like to use GLM on my longitudinal study to measure change between two time points. I followed the longitudinal tutorial, and to my understanding, I would move on to the general glm tutorial next. The longitudina