[Freesurfer] flipped_hemisphere

External Email - Use Caution Hi, after performing a segmentation with Freesurfer and making a Bem model it looks that some results are flipped between right and left hemispheres. Is there a way to check that Freesurfer is interpreting correctly the mri ? Thanks __

Re: [Freesurfer] mri_watershed

: > mri_watershed creates brainmask.mgz, and the inner_skull should fit around > that. > > On 6/3/2020 9:36 AM, Edoardo Pinzuti wrote: > > External Email - Use Caution > Dear Freesurfer community, > > I have a question regarding the mri_watershed. Is the inner_skull > extra

[Freesurfer] mri_watershed

External Email - Use Caution Dear Freesurfer community, I have a question regarding the mri_watershed. Is the inner_skull extracted from the brain.mgz which gets masked by the brainmask.mgz automatically? Thanks ___ Freesurfer mailing

[Freesurfer] Problem_mri_watershed

External Email - Use Caution Dear Freesurfer community, using the mri_watershed and -surf to crate inner_skull, outer_skin and outer_skull I get a incorrect inner_skull segmentation, probably due to an erroneous skullstrip. I tried to modify the parameters available but it does no