Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-19 Thread Dylan Nielson
External Email - Use Caution Hi Martin, Have you had a chance to take a look at this? Is there any other information you’d need? Thanks, Dylan On Thu, Aug 15, 2019 at 8:39 AM Dylan Nielson wrote: > Thanks for taking a look at this Martin. I've uploaded the fil

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-15 Thread Dylan Nielson
gt; > I have not seen it before; I've cc'ed Martin in case he has seen it. > Have you checked the underlying data to make sure that there are no > artifacts, etc? > > On 8/13/19 8:02 AM, Dylan Nielson wrote: > > > > External Email - Use Caution > >

Re: [Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-14 Thread Dylan Nielson
External Email - Use Caution Hi Freesurfer folks, Has anyone seen this error before with the longitudinal pipeline: Internal Error: Rotation should not scale. Return code: 248 Thanks, Dylan On Tue, Aug 13, 2019 at 8:02 AM Dylan Nielson wrote: > Hi Freesurfer fo

[Freesurfer] mri_robust_template in FMRIprep rotation should not scale error

2019-08-13 Thread Dylan Nielson
se subjects and saved the working directories so I can share them with you on the ftp site if you'd like. Thanks for your help, Dylan Nielson Error for subject 22477: RuntimeError: Command: mri_robust_template --satit --mov /lscratch/33515238/wrk/fmriprep_wf/single_subject_22477_wf/anat_preproc_

[Freesurfer] Problem running Tracula longitudinal analysis

2013-04-06 Thread Dylan Nielson
I am trying to run Tracula on a single subject with two time points. I get the following Error below. I suspect it is because I am not setting my dmrirc file up correctly, but I cannot figure out what the error is. I've copied my dmrirc file below as well. Thanks, Dylan Command: trac-all -prep -