Re: [Freesurfer] Optseq Help

2017-12-21 Thread Dirks, Bryce Ronald Alan
on behalf of Douglas N Greve Sent: Thursday, December 21, 2017 2:48:46 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help Yes, I sent the linux version, but it looks like the version you are using is up to date On 12/21/2017 02:25 PM, Dirks, Bryce Ronald Alan wrote

Re: [Freesurfer] Optseq Help

2017-12-21 Thread Dirks, Bryce Ronald Alan
on behalf of Douglas N Greve Sent: Thursday, December 21, 2017 1:23:11 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help 30 is probably ok but you could extend to 34 On 12/21/2017 12:21 PM, Dirks, Bryce Ronald Alan wrote: > > Ok, thank you. I have one more qu

Re: [Freesurfer] Optseq Help

2017-12-21 Thread Dirks, Bryce Ronald Alan
selected schedules were bad. In this case, you have quite a large number. It should drop when you increase the ntp On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > That is the complete terminal and thank you for your help! > > > *Bryce Dirks* > Research Associate &g

Re: [Freesurfer] Optseq Help

2017-12-20 Thread Dirks, Bryce Ronald Alan
CxiQQ52OBY%3D&reserved=0 On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psycholog

Re: [Freesurfer] Optseq Help

2017-12-20 Thread Dirks, Bryce Ronald Alan
receive any errors using v6 optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 what version of FS are you running? On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > I also tried reducing the wind

Re: [Freesurfer] Optseq Help

2017-12-20 Thread Dirks, Bryce Ronald Alan
Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: Dirks, Bryce Ronald Alan Sent: Wednesday, December 20, 2017 11:44:03 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help I

Re: [Freesurfer] Optseq Help

2017-12-20 Thread Dirks, Bryce Ronald Alan
120 sec (ie, incrase --ntp 180) and re-run On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > Hello, > > I am trying to create the optseq for a cognitive flexibility > experiment we are conducting. It consists of 10 flexibility, 10 > control, and 10 fixation trials. T

[Freesurfer] Optseq Help

2017-12-19 Thread Dirks, Bryce Ronald Alan
Hello, I am trying to create the optseq for a cognitive flexibility experiment we are conducting. It consists of 10 flexibility, 10 control, and 10 fixation trials. The flexibility and control trials are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets are not time-locked to ou