Sorry about that, Outlook seems to be preventing me from sending the code in email. I have attached a text document of the output.
output
Description: output
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Here is the debug output. ~$ cd $SUBJECTS_DIR
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Hi Doug, Thanks for your help. When I run the following command: images$ make_average_subject --out myatlas.i3 --surf-reg myatlas.i2.sphere.reg --fsgd laterality.fsgd --xhemi --lh
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Dear Freesurfer community, I am trying to complete the final iteration described in the Xhemi wiki page to compare left-right hemisphere symmetry between a patient and control group but I get an error when I run make_average_subject. Basic information: FREESURFER_HOME: /projects/ics/software/freesu
