Re: [Freesurfer] help extracting Brodmann areas masks

2014-09-08 Thread David Provencher
the > thresholded version, a threshold has been applied to the average BA label, > to make it have an area as close as possible to the average area of the > individual BA labels. I hope this makes sense. > > a.y > > On Mon, 8 Sep 2014, David Provencher wrote: > >> Hi Br

Re: [Freesurfer] help extracting Brodmann areas masks

2014-09-08 Thread David Provencher
which is the annot containing the labels thresholded to have the correct area cheers Bruce On Mon, 8 Sep 2014, Bruce Fischl wrote: Hi David what is the annot you are using in mris_label2annot? is it the ?h.BA.annot? cheers Bruce On Mon, 8 Sep 2014, David Provencher wrote: Hi, I am new to

[Freesurfer] help extracting Brodmann areas masks

2014-09-07 Thread David Provencher
Hi, I am new to freesurfer and I am trying to figure our how to extract 3d masks in native space for the visual cortex (BA 17,18,19) of individual subjects. I have looked at other threads similar to this, but there are still a few things I can't figure out in generating the masks (the conversi