[Freesurfer] extracting the version of FreeSurfer used to process some data

2018-12-07 Thread David Groppe
External Email - Use Caution Hi FreeSurfers, I'm working with some data that has been collected and processed with FreeSurfer over several years. Consequently, some individuals have been processed with different versions of FreeSurfer. Is there a file in an individual's subject

Re: [Freesurfer] Fwd: localGI bug

2016-12-28 Thread David Groppe
orresponding_center_FSformat.m > make_roi_paths.m > > We have to wait for freesurfer developers to see their opinion. Maybe they > have fixed this already. The original code and changes are commented. > > I hope this can be helpful. > Best regards > Yasser > > > > >

[Freesurfer] Postdoc opening in multimodal human brain mapping/modulation & epilepsy

2014-06-22 Thread David Groppe
-1/2015. For more information about the lab see: http://www.feinsteininstitute.org/faculty/ashesh-mehta-md-phd/ If interested, please submit CV and short statement of interest to Dr. Ashesh Mehta at ame...@nshs.edu for more information. -- David Groppe, Ph.D. Institute Scientist Laboratory

[Freesurfer] Research Assistant Position Available in Human Brain Mapping at New York's Feinstein Institute for Medical Research

2014-04-16 Thread David Groppe
scholarship, problem solving, and motivation -2 year commitment preferred For more information about the lab see: http://www.feinsteininstitute.org/faculty/ashesh-mehta-md-phd/ For more information about the position please send curriculum vitae and cover letter to Dr. David Groppe (david.m.gro

Re: [Freesurfer] read_label.m produces spotty label (as compared to tksurfer)

2012-06-04 Thread David Groppe
THAT was the problem. Thanks so much Bruce. I owe you one. -David On Sunday, June 3, 2012, Bruce Fischl wrote: > Do you change the vertex indices together 1-based in matlab? I don't see it... > > Bruce > > > > On Jun 3, 2012, at 9:06 PM, David Groppe wrote: >

Re: [Freesurfer] read_label.m produces spotty label (as compared to tksurfer)

2012-06-03 Thread David Groppe
> wrote: >> hmmm, and how are you displaying it in the second (patchy) view? I don't >> think tksurfer fills any holes by default >> >> Bruce >> >> >> On Sun, 3 Jun 2012, David Groppe wrote: >> >>> Thanks for the nigh-instantaneous respons

[Freesurfer] MD, DO, or MD/PhD fellowship in epilepsy, brain connectomics, and cognitive neuroscience

2012-01-19 Thread David Groppe
is part of the New York State ECRIP program, which offers a competitive salary and an opportunity to supplement income with clinical work. Please submit CV and short statement of interest to Dr. Ashesh Mehta at ame...@nshs.edu for more information. -- David Groppe, Ph.D. Postdoctoral Researcher

Re: [Freesurfer] fixing hemisphere leakage

2011-12-28 Thread David Groppe
Thanks for the speedy response Bruce. I'm running: $Id: recon-all,v 1.379.2.17 2011/05/20 22:48:18 nicks Exp $ -David On Wed, Dec 28, 2011 at 7:44 PM, Bruce Fischl wrote: > Hi David > > what version are you running? > > Bruce > > On Wed, 28 Dec 2011, David Groppe