Re: [Freesurfer] Freesurfer Template Creation

Dear experts, any suggestion about my question? (see below) Thank you in advance! Daniele \- Messaggio originale - \Da: "Daniele Orlandi" \A: freesurfer@nmr.mgh.harvard.edu \Inviato: Venerdì, 16 giugno 2017 18:01:59 \Oggetto: Freesurfer Template Creation \ \Dear expert

[Freesurfer] Freesurfer Template Creation

e creation of the Template? Thank you again! Best Daniele _____ Daniele Orlandi, PsyD Laboratory of Alzheimer's Neuroimaging and Epidemiology IRCCS Fatebenefratelli,Via Pilastroni 4,25125 Brescia - Italy T: +39 030 35 01 563 - M: +3

Re: [Freesurfer] Freesurfer Digest, Vol 153, Issue 8

nio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 7 Nov 2016, at 16:39, Daniele Orlandi mailto:dorla...@fatebenefratelli.eu>> wrote: Dear experts, I've finished FSv5.3

[Freesurfer] FreeSurfer 6.0 (beta) Error in segmentSubjectT1_autoEstimateAlveusML (line 588)

adCroppedImage (line 11) Error in segmentSubjectT1_autoEstimateAlveusML (line 588) Could you help me? Best Daniele PS: Even though one of the last row display " finished without error", no output is generated in the /mri/ folder. -- -- Daniele Orlandi, PsyD IRCCS Fatebene

[Freesurfer] -hippocampal-subfields-T1

dear all, I'm running analysis with the new FS-v6.0 using the flag -hippocampal-subfields-T1 and I get the following error: none Matrix: -3.3 0 0 0 0 -3.3 0 3.3 0 Offset: [-34.0783, 128.423, -71.9905] Center: [0, 0, 0] Translation: [-34.0783, 128.423, -71.9905]

[Freesurfer] subfields segmentation FS v6.0

Dear all I'm running the new pipleline for hippocampal subfields segmentation with FreeSurfer v6.0 on a T13D image. As results i can extract values for the Whole hippocampus and the following subfields: Hippocampal_tail, subiculum, CA1, hippocampal-fissure, presubiculum, parasubiculum, molecular_la

Re: [Freesurfer] visualizing paths stats by voxel

tract, but clumped together at some parts and spread out on > others, see: > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> this looks different to your slides: > >>>>>>>>

[Freesurfer] -hippocampal-subfields-T1T2

avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/mri/transforms/T1_to_T1+T2.v10.lta Do you have any suggestion? thank you all for your collaboration Daniele ___________ Daniele Orlandi, PsyD, Resea