white.asc -l left_frontal_lobe.txt -o left_frontal_lobe.gii
All of the named files are in the same folder.
Thank you again. Confusingly, it does seem like probtrackx is doing something
with the .gii files!
Dan
Sorry, I meant does the left_frontal_lobe.gii overlay properly on the orig
volume?
dougOn 03/
tkmedit subject orig.mgz -surfs -overlay leftfrontallobe.nii.gz -fminmax
.5 1
dougOn 03/26/2013 07:20 AM, Daniel Lumsden wrote:
> Bruce
>
> Many thanks - that's given me a lot more guidance. Following the help,
> i've put together the command below:
>
> mri_sur
try using mri_surf2vol instead (it has a much bigger help, thanks to
> Doug0
> Bruce
> On Mon, 25 Mar 2013, Daniel Lumsden wrote:
>
> > Dear All
> >
> > Apologies for what I'm sure is a very basic question. I'm new to using
> > freesurfer, a
Dear All
Apologies for what I'm sure is a very basic question. I'm new to using
freesurfer, and would like to generate cortical parcellations for running in
probtrakx. I have followed the instructions from various sources and have
managed to generate the parcellations from recon-all, extract t
