-- Forwarded message --
From: Daniel H Choi <[EMAIL PROTECTED]>
Date: Fri, Aug 8, 2008 at 11:10 AM
Subject: Re: [Freesurfer] editing masks
To: Bruce Fischl <[EMAIL PROTECTED]>
Hi all,
I was wondering how to edit the voxels of a mask (the name of which is
"lh.
Hi,
I have a binary mask that I apply to my .mgz files. It allows me to block
everything outside of the STG as 0 and everything inside the way it is. I
was wondering though how I might go about editing the mask? I see that there
are random voxels that have been left out and I would like to fill th
Hi,
I am trying to change my dicom files to mgz format. I know recon-all can do
this, however after the mgz file is created, tkmedit will not display it. As
described in the freesurfer-wiki site, there are steps outlining 2
acquisition directories. What does this specifically refer to? I assumed
t
Does anyone know if GTCA is part of the freesurfer commands? My protocol
requires that I use a "GTCA" command to create a better surface image for
stg. If not, can anyone direct me towards a resource to explain what it is
and how to use it? Thanks.
--
Daniel Horim Choi
Northwestern University
Cla
Hi,
I was wondering if there was a way to change all of the dicom files from one
brain to one .mgz file. Thanks
Dan
--
Daniel Horim Choi
Northwestern University
[EMAIL PROTECTED] or
[EMAIL PROTECTED]
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Please note the command we used:
mri_mask brainmask.mgz lh.stg.mask.mgz brainout.mgz
and the result we got was:
Writing masked volume to brainout.mgz...done.
On Fri, May 9, 2008 at 2:39 PM, Daniel H Choi <[EMAIL PROTECTED]>
wrote:
> Hi,
>
> I have tried applying a binary mas
Hi,
I have tried applying a binary mask, specifically for STG, in conjunction
with the mri_mask command. We applied it to a brainmask volume, but we did
not get the result we wanted. The output we recieved was simply the mask
that we used. We wish to produce an output that gives the STG volume alo
