Re: [Freesurfer] Faulty alignment to standard surface

2017-03-15 Thread Daan Wesselink
ot;\-L" -L where label_name is the exact name of the central sulcus label in the gcsa file you use, and can be obtained by looking in our color lookup table file such as FreeSurferColorLUT.txt, or just running mris_info on the gcsa file you are using (they are all in $FREESURFER_HOME/a

Re: [Freesurfer] Faulty alignment to standard surface

2017-03-14 Thread Daan Wesselink
nicely. However, the coregistration to the standard > > surface has gone wrong: it seems like the central sulcus (e.g. labels > > BA1, BA3a) is placed on top of the postcentral sulcus. > > > > Does someone know ho

[Freesurfer] Faulty alignment to standard surface

2017-03-10 Thread Daan Wesselink
BA3a) is placed on top of the postcentral sulcus. Does someone know how to fix this problem and/or better identify the step where it went wrong? Many thanks, Daan Wesselink ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu