[Freesurfer] Flag: -subjectid unrecognized

hi, I converted one analyze file to MGZ format, then try use the recon-all -autorecon-all -subjid bert (replace subjectid by myid ), but the command run nothing but Flag: -subjectid unrecognized. Anybody has some idea how to fix it? Thanks for any help! Chunchun _

[Freesurfer] basic questions about cortical thickness

Hi, I have some basic questions about cortical thickness. 1) What's the image requirement for calculating cortical thickness? slice thickness, resolution? 2) If analyzing one brain image on basic system requirement linux machine ( 2G ram, 2G processor ). How long does it take? Thanks Chunchun _

[Freesurfer] Recommendation for Linux machine

Hi, We plan to buy Linux machine for freesurfer and other brain image processing. Any recommendation and related links? Thanks Chunchun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesu

[Freesurfer] Testing FreeSurfer installation error

I installed the freesurfer following exactly as the instructions on the website. When I test it, "recon-all -s bert -all" doesn't work, it runs for a few min. and shows "flirt: Command not found. ERROR: running flirt". When I try to use my own data, convert dicom to mgt, "mri_convert" command show