[Freesurfer] recon-all failing to generate wm surface

2022-11-23 Thread Christopher Mcnorgan
External Email - Use Caution A student and I have independently been trying to reconstruct a dataset. We've tried it a couple different ways using either an additional FLAIR or a T2 image and always hit a point where the process halts because of a missing surface file: Loading

[Freesurfer] mri_convert help w/ GE Genesis files

2021-06-17 Thread Christopher Mcnorgan
External Email - Use Caution Hi all, I’ve been provided with some data collected on a 1.5T GE scanner from an old published study. The paper doesn’t indicate the scanner model (beyond that it’s a 1.5 GE scanner), but I believe they came from a GE Genesis, based on the .MR file e