[Freesurfer] Understanding MNI305 alignment

2016-08-25 Thread Christopher J Markiewicz
aries an artifact of the smoothing done, and thus we can simply apply ROI labels in MNI305 to the functional data, or does this suggest something has gone wrong in our preprocessing? Thanks, -- Christopher J Markiewicz Ph.D. Candidate, Quantitative Neuroscience Laboratory Boston Unive

Re: [Freesurfer] tksurfer

2015-06-17 Thread Christopher J Markiewicz
> Thanks, > > Isabel I'm guessing you're trying to rename from the file explorer? You should be able to do this from the command line: mv /Applications/freesurfer/license.txt \ /Applications/freesurfer/.license Depending on permissions, you may need to use 'sudo

[Freesurfer] Nifti surface files

2015-06-12 Thread Christopher J Markiewicz
possibilities. Thanks. -- Christopher J Markiewicz Ph.D. Candidate, Quantitative Neuroscience Laboratory Boston University [0] Command: mri_surf2surf --hemi rh --srcsubject fsaverage \ --srcsurfval $SUBJECTS_DIR/fsaverage/surf/rh.orig.avg.area.mgh \ --trgsubject ico --trgsurfval rh.ic