Re: [Freesurfer] Shifted surface after gyrification index is calculated

2015-12-10 Thread Chris Holdgraf
py_header. Or you can can send me the two surfaces (before and after > smoothing) and I can see if it fixes the problem > > cheers > Bruce > On Thu, 10 Dec 2015, Chris Holdgraf wrote: > > Yep - sorry, here's apic: >> https://cloud.githubusercontent.com/assets/1839645/

Re: [Freesurfer] Shifted surface after gyrification index is calculated

2015-12-10 Thread Chris Holdgraf
comment? Or you can try mris_copy_header to see if > that does the trick > > > cheers > Bruce > > > On Thu, 10 Dec 2015, Chris Holdgraf wrote: > > Hey Bruce - thus far I have used pretty default parameters. I first ran >> recon-all on each subject, then simply ran `

Re: [Freesurfer] Shifted surface after gyrification index is calculated

2015-12-10 Thread Chris Holdgraf
information? Try looking at the header with mris_info before and > after smoothing > > cheers > Bruce > On Thu, 10 Dec 2015, Chris Holdgraf wrote: > > > Hey Freesurfer folks - I'm looking into using Freesurfer for doing > electrode > > reconstruction / co-re

[Freesurfer] Shifted surface after gyrification index is calculated

2015-12-10 Thread Chris Holdgraf
Hey Freesurfer folks - I'm looking into using Freesurfer for doing electrode reconstruction / co-registration in electrocorticography. We're making good progress on figuring out recon-all for surfaces and doing co-registration to CTs. However, I think I've encountered a strange bug. I'm trying to