Re: [Freesurfer] T2 pial

2013-04-17 Thread Charles Malpas
0.00, TI=0.00, flip angle=0.00 > > i_ras = (-0.996796, 0.0725774, -0.0336276) > > j_ras = (0.065149, 0.980551, 0.185135) > > k_ras = (-0.0464102, -0.182351, 0.982138) > > INFO: Reading transformation from file > /home/linux/Escritorio/COHORTE_T2/ACC019/mri/transforms/T2raw.lta..

Re: [Freesurfer] Pial error (over estimation)

2013-03-25 Thread Charles Malpas
e soon if you can upload the > subject > Bruce > > > > On Mar 25, 2013, at 9:44 PM, Charles Malpas < > c.mal...@student.unimelb.edu.au> wrote: > > Dear Freesurfer experts, > > I am having a strange problem with a single brain. Freesurfer is over > estimating

Re: [Freesurfer] bbregister error

2013-03-13 Thread Charles Malpas
d the subjects dir. Kind regards, - Charles On 11 March 2013 19:53, Douglas Greve wrote: > > Hi Charles, can you verify that brainmask.mgz exists for that subject? > What do you get if you run > stem2fname $SUBJECTS_DIR/$subject/mri/brainmask > > doug > > > >

Re: [Freesurfer] bbregister error

2013-03-10 Thread Charles Malpas
ing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail

Re: [Freesurfer] New Freesurfer v5.2

2013-03-03 Thread Charles Malpas
he person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error

Re: [Freesurfer] surface morphology

2013-02-09 Thread Charles Malpas
gt; HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- *Charles Malpas * Master of Psychology (Clinical Neuropsychology) / PhD Ca

[Freesurfer] longitudinal processing with -FLAIRpial

2013-02-07 Thread Charles Malpas
longitudinal runs? Is it even possible at this stage? Many thanks for your time, - Charles -- *Charles Malpas * Master of Psychology (Clinical Neuropsychology) / PhD Candidate Melbourne School of Psychological Sciences & Department of Medicine (RMH) The University of Melbourne