Carlos,
I’m not sure what happened. There are no errors reported in recon-all.log. Can you try running it again without ‘-parallel’?
Best,
Yujing
From: Carlos Estévez Fraga
Sent: Friday, March 10, 2023 7:39 AM
To: Freesurfer support list ; Huang, Yujing
Subject: Re: [Freesurfer] recon-all
External Email - Use CautionSorry just wanted to follow up on this as not sure the email was receivedMany thanks Best regards CarlosEnviado desde mi iPhoneEl 9 mar 2023, a la(s) 17:32, Carlos Estévez Fraga escribió:Sure I am attaching the recon-all file. Below is the output I get
External Email - Use Caution
Dear Freesurfer team,
I am trying to run recon-all -all in the cluster but unfortunately I am
unable to obtain the parcellated images (exact command is recon-all
-parallel -openmp $NSLOTS -s ${j} -i ${j}_corrected.nii.gz -all -cw256)
I have run the s
