[Freesurfer] recon-all error

2010-08-17 Thread Carl Dambkowski
ts MNI_DIR Desktop/local/freesurfer/mni With no errors. When I give the command: echo $FREESURFER_HOME I also get back: Desktop/freesurfer Any suggestions? Thanks, Carl -- Carl Dambkowski Research Assistant Cerebral Localization Laboratory Columbia University Medical Center (212

[Freesurfer] Undefined Variable

2010-08-02 Thread Carl Dambkowski
something basic or something is completely wrong. I can access the already created files but it doesn't let me run a recon-all for some reason. Thanks for your help! Carl -- Carl Dambkowski, MS Research Assistant Cerebral Localization Laboratory Columbia University Medical Center