[Freesurfer] Talaraich Problems

Thank you very much Kevin for your help! Now I have fixed my problem on Lib.glut libraries Unfortunately , I have another problem ( I hope is the lastone) If I run recon-all -stage1 the computer freezes as the following point: writing to orig/orig.mnc... Outputting Volume: .

[Freesurfer] Freeglut problem

Hi all I've installed Freesurfer and when I open csurf to edit segmentation on images, I get the following error: /usr/local/freesurfer/bin/Linux/tkmedit: error while loading shared libraries: libglut.so.3: cannot open shared object file: No such file or directory Now, I've installed Freeglut a

[Freesurfer] Talaraich problem

Hi all I have a problem ( computer crash) during talairach program in recon-all -stage1 , does this mean that There is a problem with MINC installation or the MINC program? Is this the software to compute the Talairach transform? I had to do again the installation of freesurfer and it is possibl

[Freesurfer] mris_anatomical_stats

Hi everybody, Currently, we can use mris_anatomical_stats to report statistics such as thickness +/- std. dev. over the list of brain regions, as created by the parcellate_subject program. We are wondering if it is currently possible to produce similar statistics, but not just on thickness, etc.,

[Freesurfer] mri_fill

Hi everybody, I'm trying to fix a problem and I would be very happy if someone has an advice for me :) In some case I get an error about finding Corpus Callosum. So I have tried mri_fill -cc-xyz X Y Z and it seem to work. Now can I use recon-all to go ahead? (I really don't know if I'm able to

[Freesurfer] Error in Sphere

Hi everybody, does anyone give me an advice, please. I don't want to loose this subject at the end. Can I skip this step or can I try to fix it? Thanks a lot Massimiliano INFO: SUBJECTS_DIR is /net/apollo/nib/calabrem/freesurfer/subjects INFO: starting per-hemisphere operations - Starting

[Freesurfer] Error

Hi everybody Does anyone know if there is something that I can do to fix the follow error occurred in stage1 of recon-all? Thnaks a lot Massimiliano Calabrese Imaging Group Neuroimmunology Branch NINDS, NIH. mri_fill: could not find corpus callosum No such file or directory INFO: Modifying dst

[Freesurfer] Another question

I'm sorry but I have another question for you. Sometimes the cutting planes are not correct and it doesn't delete the cerebellum. Whay can I do? Manual editing is my only chance? Thanks a lot Massimiliano Calabrese Neuroimaging Group Neuroimmunology Branch NINDS, NIH __

[Freesurfer] Multiple Sclerosis's lesion

Goodmorning everybody. Do you think I have to fill ( during manual editing) the white matter lesion (black hole) which are outlined in green? Thanks a lot for your help. Massimiliano Calabrese Imaging group Neuroloimmunology Branch NINDS, NIH ___ Free

[Freesurfer] Label and overlay

Title: Label and overlay     I'm very sorry for the stupid question: Which the functions of the labels and overlay, which the goal? Give me an example please Max ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard

[Freesurfer] Parcellation

Title: Parcellation Hello everybody I have the problem with Parcellation: Setenv CSURF_DIR subjectname        ok Parcellate_subjectname              error home/calabrem/freesurfer/subjects/01165> parcellate_subject 01165 reading atlas from 01165/average/lh.atlas2002_simp