Re: [Freesurfer] Creating own atlas

2014-07-11 Thread Brianna Damadian
entricles flag? > cheers > Bruce > On Fri, 11 Jul 2014, Brianna Damadian wrote: > > Hi Bruce, I'm using v5.3.0. Does this version do well with patients with >> large ventricles? >> Two cases I ran seemed to do well with the ventricles, but some others >> see

Re: [Freesurfer] Creating own atlas

2014-07-11 Thread Brianna Damadian
re you > running? > > cheers > Bruce > > On Fri, 11 Jul 2014, Brianna Damadian wrote: > > Hi Bruce, Would be interested in an atlas for aseg that gives total gray >> matter and ventricle volume. >> Would I be able to create an atlas based on these 30 patients with

Re: [Freesurfer] Creating own atlas

2014-07-11 Thread Brianna Damadian
> to have labeled volumes for creating a new atlas > > cheers > Bruce > > > On Fri, 11 Jul 2014, Brianna Damadian wrote: > > > Hello, > > > > I am interested in creating my own atlas for elderly patients with > enlarged ventricles. We have about 30 patients wi

[Freesurfer] Creating own atlas

2014-07-11 Thread Brianna Damadian
Hello, I am interested in creating my own atlas for elderly patients with enlarged ventricles. We have about 30 patients with axial MPR scans. Is this enough to build an atlas? Thanks, Brianna ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.e

Re: [Freesurfer] Longitudinal pipeline + LME question

2014-07-02 Thread Brianna Damadian
ers. > > Best Martin > > > Sent via my smartphone, please excuse brevity. > > Original message > From: Brianna Damadian > Date:07/02/2014 10:04 PM (GMT+01:00) > To: Freesurfer@nmr.mgh.harvard.edu > Subject: [Freesurfer] Longitudinal pipeline +

[Freesurfer] Longitudinal pipeline + LME question

2014-07-02 Thread Brianna Damadian
Hello experts, We are setting out to look at a sample of 10 (subset of eventual larger sample) who have at least 2 sets of MRI. Some have many more than 2. However, some of the scans were done on different scanners (a few on 1.5T versus most on 3T) and with slightly different parameters (namely, d