Re: [Freesurfer] Xhemi question

2013-07-16 Thread Boratyn, Daria A.
, Daria From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Tuesday, July 16, 2013 11:20 AM To: Boratyn, Daria A. Cc: Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Xhemi question Hi Daria, I'm not sure what you are trying to do. What do you

Re: [Freesurfer] Xhemi question

2013-07-16 Thread Boratyn, Daria A.
Couple of quick things in regards to smoothing prior to calculating the LI. I'm just trying to use the fsaverage_sym atlas and improve my xhemi registration, not conduct a thickness asymmetry analysis. Should the smoothing be done before the xhemi registration? If so, do you have a recommendatio

Re: [Freesurfer] Xhemi question

2013-07-01 Thread Boratyn, Daria A.
Hi Doug, Could you please clarify when you suggest it's best to smooth if using the xhemi scripts? I'm a bit confused based on the emails below. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg27761.html Thank you, Daria From: Douglas N Gr

Re: [Freesurfer] Xhemi question

2013-06-13 Thread Boratyn, Daria A.
Hi Doug, I've tried using tkregister2 and registering my individual subject's T1 to the fsaverage_sym but it hasn't worked. Could you point me to the correct movable volume and register.dat files that I should use? I'm not sure what they print out as. Thank you, Daria ___