[Freesurfer] recon-all vs. recon-all-clinical: missing ROIs

2024-01-05 Thread Biondo, Francesca
External Email - Use Caution Hi, recon-all generates these volumes, amongst others: "Left-vessel", "Left-choroid-plexus", "Right-vessel", "Right-choroid-plexus" recon-all-clinical does not generate these volumes. Or at least that I am able to detect. Any ideas how to extract or c

[Freesurfer] recon_all_clinical and aseg.stat

2023-11-14 Thread Biondo, Francesca
External Email - Use Caution Hello! I encountered 3 issues with recon_all_clinical: 1. Both version 7.4.0 and version 7.4.1 do not generate aseg.stat file. Is this normal? I would like to extract volume parcellations via asegstats2table given that I need the volume parcellati