Re: [Freesurfer] Running a contrast on multiple taskregs in FSFAST

2014-11-11 Thread Bill Taylor
Sorry, Though we do have freesurfer pipelines we run in Madison, I responded to wrong email. Bill Taylor Center for High Throughput Computing Computer Sciences University of Wisconsin, Madison On 11/11/2014 12:09 PM, Bill Taylor wrote: > I'll start the process thursday. > On 11/11/20

Re: [Freesurfer] Running a contrast on multiple taskregs in FSFAST

2014-11-11 Thread Bill Taylor
I'll start the process thursday. On 11/11/2014 12:04 PM, Douglas N Greve wrote: > It will be the same as the DOF of the individual contrasts (don't sum them). > > On 11/11/2014 12:58 PM, Caspar M. Schwiedrzik wrote: >> ok, I will try that. How do I get the degrees of freedom? Thanks! Caspar >> >> 2

[Freesurfer] mni/bin/nu_correct: Exec format error. Binary file not executable.

2014-06-17 Thread Bill Taylor
_1/src/ 1217_1/trash/ 1217_1/bem/ total 152 -- Bill Taylor 608-263-2656 (608-219-4430) Center for High Throughput Computing(CHTC) HTCondor project Computer Sciences University of Wisconsin, Madison ___ Freesurfer mailing list Free

[Freesurfer] Tracula time estimates

2011-09-01 Thread Bill Taylor
roups on campus interested in our automation involving thousands of scans. -- Bill Taylor 608-263-2656 (cell 608-219-4430) Center for High Throughput Computing(CHTC) Condor project Computer Sciences University of Wisconsin, Madison ___ Freesurfer ma

[Freesurfer] -localGI using compiled matlab - solved

2011-08-29 Thread Bill Taylor
Harvard. It would be great to have this variation available to others. -- Bill Taylor 608-263-2656 (cell 608-219-4430) Center for High Throughput Computing(CHTC) Condor project Computer Sciences University of Wisconsin, Madison ___ Freesurfer mailing list

[Freesurfer] Code changes to use Compiled Matlab?

2011-08-09 Thread Bill Taylor
its type was char. Error in ==> strel>ParseInputs at 1308 Error in ==> strel>strel.strel at 143 Error in ==> make_outer_surface at 41 ^G Images:strel:invalidType * -

Re: [Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread Bill Taylor
, Bruce Fischl wrote: > Hi Bill, > what portions are you talking about? recon-all shouldn't use any matlab. > > cheers > Bruce > On > Tue, 19 Jul 2011, Bill Taylor wrote: > >> So I peaked in archive and did not get a hit. >> >> The situation is that the

[Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread Bill Taylor
processing. To compile the Matlab one needs to compile the entry points. But to run it, we'd have to change how it is called. Anyone have pointers for me? Bill Taylor Center for High Throughput Computing Condor Project Computer Sciences University of Wisconsin, Madison 608-219