Hi Freesurfers (Lilla),
I'm running v5.1.0 on a Mac trying to apply a cvs morph via the following
function:
mri_vol2vol --targ cvs_avg35_inMNI152 --m3z
$SUBJECTS_DIR/NC001/cvs_avg35_inMNI152/combined_tocvs_avg35_inMNI152_elreg_afteraseg-norm.m3z
--noDefM3zPath --mov $SUBJECTS_DIR/NC001/labels/
d that the lowbflipped is flipped in Mango: lowb.nii is X+,Y-,Z+;
lowbflipped.nii is X-,Y-,Z+. However, mri_info says the orientation for both
is RPS. I am not sure what this means.
Please help,
Daniel
On Jul 11, 2013, at 5:58 PM, "Barron, Daniel S"
mailto:barr...@livemail.uthscsa.ed
wrote:
you can run bbregister using the b=0 image as input. The final cost
function value should beless than .9, if it is more than that then it
probably means you have an LR flip.
doug
On 07/11/2013 03:52 PM, Barron, Daniel S wrote:
Dear Freesurfers,
I am trying to perform probabilistic tractogra
Dear Freesurfers,
I am trying to perform probabilistic tractography (FSL Probtrackx) between seed
and target VOIs made with Freesurfer's recon-all (T1) and dt_recon (DW)
pipelines.
I have the original T1 DICOMs, however, I only have the DW NIFTI image volumes.
I do not know how the DW DICOM
corporates both surfaces and
volumes.
Again, thank you very much for the patch and for the excellent software.
Cheers,
Daniel
On May 28, 2013, at 11:54 PM, Barron, Daniel S wrote:
> Thanks for the path, Zeke.
>
> Because it didn't download as an executable file to my compu
arvard.edu/pub/dist/freesurfer/patches/mris_resample
>
> Feel free to contact me if you have any additional questions/issues.
>
> -Zeke
>
>
> Original Message
> Subject: Re: [Freesurfer] mris_resample: Command not found.
> Date: Tue, 28 May 2013 11:41:21
Hi Lilla,
I'm using OSX 10.8.3
Thanks,
Daniel
From: Lilla Zollei [lzol...@nmr.mgh.harvard.edu]
Sent: Tuesday, May 28, 2013 10:04 AM
To: Barron, Daniel S
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: mris_resample: Command not found.
Hi Daniel,
Hello,
I am trying to perform an inter-subject registration using mri_cvs_register on
version 5.3.
When I ran mri_cvs_check, my feedback was I needed to find
"mri_cvs_register.settings.txt" but I didn't worry about this per Lilla's post:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2
