Re: [Freesurfer] ces.bhdr

Hi Rob, Trying setting the env variables like this if you are in dev env and want the bhdr files. setenv FSF_OUTPUT_FORMAT bhdr Doug is replacing all the fsfast output formats to be in .nii Balaji Robert Levy wrote: Hi Doug, Thanks again. I think something must be wrong with stxgrinder t

Re: [Freesurfer] smoothing error...?

Hi Cameron, Not sure if this is very much relevant to the error. But try giving -space and -spacedir option separately.. i.e. -space sph -spacedir Balaji Cameron Ellis wrote: Hi, After sphreical resampling I attempted to smooth the spherical surface which seemed to work fine bu

[Freesurfer] corrupted curvature file

Dear all, One of our subjects have a corrupted curvature file(lh.curv) due to some overwriting. This subject was reconstructed using older version of freesurfer. I would like to know which step/command should I rerun in order to retrieve this file. Thanks in advance, Balaji ___

[Freesurfer] make_average_subject question

Hi all, I made an average subject using make_average_subject script. When I looked in to the surf directory there were two different curvature( ?h.curv and ?h.avg_curv) of slightly different sizes. Could anyone plz tell me what is the difference btwn these two files? Also, can I paint these av

Re: [Freesurfer] func2tal-sess question

Cameron Ellis wrote: Hi, Quick simple question I hope: does running func2tal-sess with two groups at once with a sessid that includes them both and running func2tal with each group separately result in any difference? by groups do you mean the list of subjects you include in your -sf file? if s

Re: [Freesurfer] preprocessing error

I think there is some prbm in dev env? Cameron Ellis wrote: Hi, While attempting to preprocess a subjects data I am given an error message (pasted below) as the motion correction step is implemented does anyone have an idea of what the libvnl_algo.so file is and where it may be located? I am no