Hi all,
It worked! I was setting up the alias in the shell, and it didn't work. I set
up now the alias as a global alias in the tcsh profile file (~/.tcshrc) and it
worked. No problem this time.
Best,
MBP
On dijous 28 abril 2016 10:47 CEST, BAUTISTA-PERPINYA
Maximilià wrote:
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>
> - Original Message -
> From: "BAUTISTA-PERPINYA Maximilià"
>
> To: "Freesurfer support list"
> Sent: Monday, April 18, 2016 9:35:05 AM
> Subject: [Freesurfer] Hippocampal s
Dear all experts,
I am running FS 6dev version. This is my recon-all comand: "recon-all
-nuintensitycor-3T -i [directory] -s [subjectname] -all
-hippocampal-subfields-T1".
Everything goes fine until the ''Hippocampal Subfields processing (T1 only)''.
At some point it says '"mv: overwrite `imag
could also use mri_vol2vol to map this
> across subjects using the talairach.m3z and measure it in each one.
>
> cheers
> Bruce
>
> On Thu, 14 Apr 2016,
> BAUTISTA-PERPINYA Maximilià wrote:
>
> > Hi experts,
> >
> > I wish to calculate signal-to-
Hi experts,
I wish to calculate signal-to-noise ratio (SNR) of my T1 MRI images. Do you
know if I can use freesurfer for this?
SNR = mean signal at ROI / standard dev. of background noise. The mean signal
at ROI I can obtain from the aseg.stats table, but I cannot seem to find a
value describ
tor file?>
> On 01/14/2016 05:30 AM, BAUTISTA-PERPINYA Maximilià wrote:
> > Hi there experts,
> >
> > I'm runing qdec to analyze my subject data. I am able to import the
> > qdec.table.dat, but the problem comes in the Design step. I select
> > '
tor file?
>
> On 01/14/2016 05:30 AM, BAUTISTA-PERPINYA Maximilià wrote:
> > Hi there experts,
> >
> > I'm runing qdec to analyze my subject data. I am able to import the
> > qdec.table.dat, but the problem comes in the Design step. I select
> > '
Hi there experts,
I'm runing qdec to analyze my subject data. I am able to import the
qdec.table.dat, but the problem comes in the Design step. I select
'Volume-based' measure, 'Diagnosis' as my discrete independent variable and
'LeftAmygdala' as the continuous variable. I don't select any nuis
Hi FS experts,
I have an script (screenshots.txt) that takes screenshots of freeview of
several scans:
It looks like this:
-v scan1/mri/T1.mgz ; -v scan1/mri/aparc+aseg.mgz:colormap=lut:opacity=0.2 ;
-viewport sagittal -slice 80 127 127 -ss sag1_scan1 ; -v scan2/mri/T1.mgz ; -v
scan2/mri/ap
