ional step?
Thanks!
Aya
-Original Message-
>From Douglas N Greve
Sent Thu 10/28/2010 7:43 PM
To Aya Ben Yakov
Cc freesurfer@nmr.mgh.harvard.edu
Subject Re: [Freesurfer] subcortical structure coordinates
How are you converting to nifti? You can do it with mri_label2vol, just
spec ni
rotated (in a different
rotation), so somehow the conversion to native space rotates the data.
Any suggestions?
Aya
__
>From Bruce Fischl
Sent Wed 10/27/2010 3:48 PM
To Aya Ben Yakov
Cc freesurfer@nmr.mgh.harvard.edu
Subject Re: [Freesur
ry to flip
the two 256 dimensions, it doesn't help, which means somehow the 176 dimension
and the 256 dimension got flipped in the process.
If anyone has an idea how to solve this it would be very helpful.
Thanks,
Aya
__________
>From Aya Be
olumes into matlab with
>> either MRIread.m or load_mgh.m and go from there.
>>
>> cheers
>> Bruce
>>
>>
>> On Wed, 27 Oct 2010, Aya Ben Yakov wrote:
>>
>>> Hi
>>>
>>> I used FreeSurfer to automatically segment subcortica
Hi
I used FreeSurfer to automatically segment subcortical structures, and I would
now like to transfer the data to Matlab. I am looking for a way to load the
coordinates of all structures (or, if it isn't possible, for each structure, by
its number) to Matlab, in Talairach coordinates. Is this
