R is /tmp/HCP?
It looks like surfreg checks if target is ‘fsaverage_sym’. Can you try passing
just ‘fsaverage_sym’?
Best,
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
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On B
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Hi there experts!
I’m hoping to use the surfreg function on some data in which I can’t make any
modifications to the subject directory (I’m using a cluster and the data is for
public use thus prohibits any changes to it).
I want to use the fsaverage
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Hi,
I am using multiband = 4 and according to the dicom files, my slice timing is
as below.\
My question is if it is correct to do “-stc –odd “ & “-ngroups 4” in the
preproc-sess command?
Thank you so much
"SliceTiming": [
0,
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Hi,
I have two basic questions.
1- I am currently having some AP fMRI runs and I have also acquired a single PA
run to be able to do distortion correction, my original plan was to use FSL and
apply topup to get the undistorted fMRI data. How can I f
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Hi,
I hope this email finds you well.
I am doing slab imaging and when I run preproc-sess command to do the
functional preprocessing, the results of co-registration are not optimal, hence
I need to do manual editing and save a new transformation file
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Hi,
I hope this email finds you all well.
I have a basic question about the right way of using ThalamicSegmentation
method ( implemented by Iglesias et al. 2018). I plan to use this
subject-specific atlas on the data processed via the HCP pipeline.
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Dear Experts,
I would really appreciate it if you could help me with this question:
I would like to use the probabilistic atlas of human thalamic nuclei; provided
by Iglesias et al. (2018); as a prior knowledge to locate the LGN within my
subjects (
