[Freesurfer] Converting Freesurfer Cortical Thickness Output into 32K space

External Email - Use Caution Hi, Just wondering if anyone has any experience with converting freesurfer cortical thickness output into 32K space (or native space/164k space/96k space) and can share the script you use to do it? Thanks so much! Ariana Fei

Re: [Freesurfer] Cortical Thickness measures using different ways of processing

External Email - Use Caution I'm attaching a list of command I used to convert freesurfer cortical thickness output to native space: $Caret5_Command -file-convert -fsc2c "$FreeSurferFolder"/surf/"$hemisphere"h.thickness "$FreeSurferFolder"/surf/"$hemisphere"h.white "$AtlasSpaceFol

[Freesurfer] Cortical Thickness measures using different ways of processing

External Email - Use Caution Hi, We are recently trying to get cortical thickness from freesurfer and converting them to 32k. A problem we notice is that after converting to 32k, all the cortical thickness values become negative. However, when we load freesurfer thickness files in